Hi, there,<br><br>I'm recently encountering an error when implementing MISO summary.<br>I ran MISO on several samples, and some output summary successfully, while some returned this error.<br>Would you help me to find out the cause please?<br>
This is the command and the message I've got.<br><br>################### Error Message ###################<br>$ run_miso.py --summarize-samples event_analysis/se/Hip summary/se/Hip<br><br>Loading settings from: /N/soft/rhel6/miso/0.4.6/lib/python2.7/site-packages/misopy/settings/miso_settings.txt<br>
Settings: <br> filter_results True<br> min_event_reads 20<br> cluster_command qsub<br> long_queue_name long<br> short_queue_name quick<br> burn_in 500<br> lag 10<br> num_iters 5000<br> num_chains 6<br>Loading events from: /N/dcwan/projects/ngs/users/aozhou/Project_Rat_Brain/4.miso_merged/event_analysis/se/Hip<br>
Writing summary to: /N/dcwan/projects/ngs/users/aozhou/Project_Rat_Brain/4.miso_merged/summary/se/Hip/summary/Hip.miso_summary<br>Traceback (most recent call last):<br> File "/N/soft/rhel6/miso/0.4.6/bin/run_miso.py", line 615, in <module><br>
main()<br> File "/N/soft/rhel6/miso/0.4.6/bin/run_miso.py", line 586, in main<br> use_compressed=use_compressed)<br> File "/N/soft/rhel6/miso/0.4.6/lib/python2.7/site-packages/misopy/samples_utils.py", line 185, in summarize_sampler_results<br>
params = parse_sampler_params(samples_filename)<br> File "/N/soft/rhel6/miso/0.4.6/lib/python2.7/site-packages/misopy/samples_utils.py", line 58, in parse_sampler_params<br> if header[0] == '#':<br>
IndexError: string index out of range<br><br><br>-- <br>Ao Zhou<br>Ph.D. Student, <br>Bioinformatics Program,<br>School of Informatics, IUPUI<br>Tel: 317-372-7004