[miso-users] Miso error

[Ankit Arora]

Respected Sir/madam,

I am running Miso for single end and paried end reads, while I am trying 
to run miso for paired end reads. I am getting an following error :

Computing Psi values...
   - GFF index: 
/home/aarora1/Tool/misopy-0.5.0/virtualenv-develop/myVE/bin/indexed
   - BAM: /projects/aarora1/Result/C/accepted_hits_sorted.bam
   - Read length: 60
   - Output directory: /projects/aarora1/Miso
Checking your GFF annotation and BAM for mismatches...
Checking if BAM has mixed read lengths...
Found reads of length 60 in BAM.
Traceback (most recent call last):
   File "./miso", line 9, in <module>
     load_entry_point('misopy==0.5.3', 'console_scripts', 'miso')()
   File 
"/home/aarora1/Tool/misopy-0.5.0/virtualenv-develop/myVE/lib/python2.6/site-packages/misopy/miso.py", 
line 591, in main
     wait_on_jobs=wait_on_jobs)
   File 
"/home/aarora1/Tool/misopy-0.5.0/virtualenv-develop/myVE/lib/python2.6/site-packages/misopy/miso.py", 
line 372, in compute_all_genes_psi
     given_read_len=read_len)
   File 
"/home/aarora1/Tool/misopy-0.5.0/virtualenv-develop/myVE/lib/python2.6/site-packages/misopy/run_events_analysis.py", 
line 171, in check_gff_and_bam
     miso_logger.warning("It looks like your GFF annotation file and 
your BAM " \
NameError: global name 'miso_logger' is not defined


Can you please help me out. I look forward to hear back from you soon.

Regards
Ankit

-- 
Ankit Arora
Bioinformatics / Research
T +49 30 3 19 89 66 25 | F -19
arora at atlas-biolabs.com

ATLAS Biolabs GmbH
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www.atlas-biolabs.com

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