[miso-users] Run miso with rat genome?

[Delong, Zhou]

Hello,
I have some Tophat outputs from rat cells and I would like to run miso to calculat PSIs for alternatively spliced exons.
I have rat genome RN4 from UCSC but I don't have any .gff to index.
Has anyone run miso for rats and would kindly provide a .gff for RN4 or knows how to generate a .gff from a reference genome?
Thanks in advance,
Delong ZHOU
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