[miso-users] Cluster server does not load MISO

[Yarden Katz]

Hi,

The easy solution to this is to set "cluster_command" in the MISO settings file to a wrapper script of your own.  MISO just needs the "cluster_command" scripts to take in a command and somehow run it on your cluster, in a system specific way.  Your wrapper can in turn make a shell script that first puts the "module load" command in, and then invokes MISO.  E.g.

cluster_command = ~/sendjob

where "sendjob" takes the command as an argument and on the fly puts in the script with the right preface.

  --Yarden


On Jan 29, 2013, at 5:04 PM, Li Shen wrote:

> Hi,
> 
> I have a peculiar situation when running MISO on a cluster. Our
> cluster implements a module mechanism which needs to run a command
> like
> 
> module load miso
> 
> inside each batch script in order for the compute nodes to load miso.
> However, the automatically generated batch scripts do not contain this
> line by miso. Therefore, the jobs cannot be run. It seems I have to
> modify miso's python code in order to do this but I'd rather not go
> that far. BTW, miso is installed in a shared location on our server so
> I may have to install my own copy. Is there any quick fix for this
> problem?
> 
> Thanks,
> 
> 
> --
> Li Shen, Ph.D. Computer Science
> Assistant Professor
> Department of Neuroscience
> Mount Sinai School of Medicine
> One Gustave L. Levy Place, Box 1065
> New York, NY 10029
> Phone: 212-659-8622 (office)
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