[miso-users] Is exon-centric Psi always referring to isoform A?

[Li Shen]

When doing exon-centric analysis in MISO, there are always two
isoforms related with each event. My question is: is the Psi value
always corresponding to the "splice in" of the isoform A?

For SE event, this seems to be true. However, for other event types,
this is not obvious. Can someone clarify?

Thanks!

--
Li Shen, Ph.D. Computer Science
Assistant Professor
Department of Neuroscience
Mount Sinai School of Medicine
One Gustave L. Levy Place, Box 1065
New York, NY 10029
Phone: 212-659-8622 (office)