[miso-users] GFF_question

[Yarden Katz]

Hi Amy,

Do you have an example of where this is the case?  If so, please send me an example BAM and a AFE/ALE event that recapitulates this. 

Thanks, --Yarden



On Aug 4, 2012, at 1:26 AM, aiqianru wrote:

> Dear Yarden:
>          When I use the GFF of human download from the miso website, and do index of different type of events. And I run miso use these index, the question is the the AFE and ALE type of events is very slow, about 3 minutes per event. While other types are very fast only need seconds. Is there anything wrong with the ALE and AFE GFF? When I use the gff I do myself of different organism the situation doesn’t exist. Hope you can check the question. And I use the 0.4.4 version.
>  
> Thanks a lot!
>  
> Best Wishes
> Amy  
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