[miso-users] Strand filtering when running MISO

David Wood d.wood at imb.uq.edu.au
Mon Oct 8 11:45:20 EDT 2012


Hello MISO users,

My BAM file contains paired reads in the orientation FF or RR (eg both 
reads are on the same strand).  Is it possible to configure MISO to keep 
these reads and discard those in orientation FR or RF? Currently it is 
discarding all the properly paired reads.

Regards,
David




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