[miso-users] sashimi plot error

[Mar Gonzàlez-Porta]

Dear Yarden,

I just installed the newest version of MISO and I'm trying to execute the
test commands for sashimi plot. When doing so, MISO seems to run fine, but
I get this error when calling plot.py:
Any advise on what could be the cause?
Thanks!

mar at lobster$ python plot.py --plot-event "chr17:45816186:45816265:- at chr17
:45815912:45815950:- at chr17:45814875:45814965:-" test-data/event-data/
settings/sashmi_plot_settings.txt --output-dir test-plot
Reading settings from:
/net/isilon5/ma/home/mar2/software/downloads/misopy-0.4.2/misopy/sashimi_plot/settings/sashmi_plot_settings.txt
Traceback (most recent call last):
  File "plot.py", line 306, in <module>
    main()
  File "plot.py", line 301, in main
    no_posteriors=no_posteriors)
  File "plot.py", line 137, in plot_event
    no_posteriors=no_posteriors)
  File
"/homes/mar/home_microarray/software/lib/python2.7/site-packages/misopy/sashimi_plot/plot_utils/plot_gene.py",
line 648, in plot_density_from_file
    no_posteriors=no_posteriors)
  File
"/homes/mar/home_microarray/software/lib/python2.7/site-packages/misopy/sashimi_plot/Sashimi.py",
line 41, in __init__
    no_posteriors=no_posteriors)
  File
"/homes/mar/home_microarray/software/lib/python2.7/site-packages/misopy/sashimi_plot/plot_utils/plot_settings.py",
line 93, in parse_plot_settings
    colors = [None for x in settings["bam_files"]]
KeyError: 'bam_files'

Mar Gonzàlez-Porta
PhD student - Functional Genomics Group
EMBL - European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton, Cambridge
CB10 1SD
UK
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