[miso-users] miso error

[Yarden Katz]

This must be a technical problem, then, or otherwise there must not be junctions in the region plotted. Can you give an example (small) BAM file along with a GFF where you expect junction reads and none are plotted?




On Dec 25, 2012, at 9:36 PM, mykhwab wrote:

> 
> i have already made sashmi plots for my data, but i cant find juction reads arcs, 
> 
> 
> Regards
> On Wed, Dec 26, 2012 at 11:32 AM, Yarden Katz <yarden at mit.edu> wrote:
> To plot this, you have to use sashimi_plot:
> 
> http://genes.mit.edu/burgelab/miso/docs/sashimi.html
> 
> We've been working with IGV to get something like sashimi_plot implemented in the IGV browser.  Not sure when this feature will come out, but it's on the list.
>