[miso-users] sashimi_plot plot_event question

[=?gb2312?B?sKzZu8jj?=]

Dear Yarden:

       Thank you for the reply. I have one more question of sashimi_plot. 

       When I use plot.py ¨Cplot-event, there are always some genes can¡¯t
be drawn. Such as gene ADD3, I draw the gene use follow command:

Python /misopy/sashimi_plot/plot.py --plot-event
"chr10:111890121:111890244:+ at chr10:111892063:111892158:+ at chr10:111893084:111
895452:+" /hg19/index/SE/  sashimi_plot_settings.txt --output-dir test-plot

   And I got the message below:

 

/usr/local/lib/python2.6/dist-packages/mpl_toolkits/__init__.py:2: 

 

UserWarning: Module dateutil was already imported from
/usr/local/lib/python2.6/dist-packages/dateutil/__init__.pyc, but
/usr/lib/pymodules/python2.6 is being added to sys.path

  __import__('pkg_resources').declare_namespace(__name__)

Traceback (most recent call last):  File
"/media/disk2/qrai//tool/misopy-0.4.1/misopy/sashimi_plot/plot.py", line
306, in <module>

    main()  File
"/media/disk2/qrai//tool/misopy-0.4.1/misopy/sashimi_plot/plot.py", line
301, in main

    no_posteriors=no_posteriors)  File
"/media/disk2/qrai//tool/misopy-0.4.1/misopy/sashimi_plot/plot.py", line
137, in plot_event

    no_posteriors=no_posteriors)TypeError: plot_density_from_file() got an
unexpected keyword argument 'no_posteriors'

       Waiting for your help, thanks a lot.

 

Sincerely Amy Ai

 

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