[miso-users] Installation problem

[Yarden Katz]

Dear Julien,

Could you please send us what version of make and gcc you are using, and on what operating system? 

Also, did you download fastmiso from github?  If so, can you confirm that you are indeed on the "fastmiso" branch, by typing:

$ git branch

It should output a "*" next to "fastmiso"

Thanks! 
 Best, --Yarden





On Dec 14, 2011, at 12:49 PM, Julien Roux wrote:

> Dear MISO developers,
> 
> I am trying to install fastMISO but I encountered some errors when 
> running the "make" command (see below)
> Any idea how to fix this?
> Thanks a lot
> Julien
> 
> --------------------------------
> [jroux at bigmem01 MISO]$ make
> cp src/assignment.c splicing/src/assignment.c
> cp src/complexity.c splicing/src/complexity.c
> cp src/convert.c splicing/src/convert.c
> cp src/error.c splicing/src/error.c
> cp src/fortran_stuff.c splicing/src/fortran_stuff.c
> cp src/gff.c splicing/src/gff.c
> cp src/ident.c splicing/src/ident.c
> cp src/lapack.c splicing/src/lapack.c
> cp src/lawson_hanson_nnls.c splicing/src/lawson_hanson_nnls.c
> cp src/matrix.c splicing/src/matrix.c
> cp src/memory.c splicing/src/memory.c
> cp src/miso.c splicing/src/miso.c
> cp src/miso_paired.c splicing/src/miso_paired.c
> cp src/nnls.c splicing/src/nnls.c
> cp src/qsort.c splicing/src/qsort.c
> cp src/qsort_r.c splicing/src/qsort_r.c
> cp src/random.c splicing/src/random.c
> cp src/simulator.c splicing/src/simulator.c
> cp src/solve.c splicing/src/solve.c
> cp src/strvector.c splicing/src/strvector.c
> cp src/util.c splicing/src/util.c
> cp src/vector.c splicing/src/vector.c
> cp src/f2c.h splicing/src/f2c.h
> cp src/splicing_error.h splicing/src/splicing_error.h
> cp src/splicing.h splicing/src/splicing.h
> cp src/splicing_lapack.h splicing/src/splicing_lapack.h
> cp src/splicing_matrix.h splicing/src/splicing_matrix.h
> cp src/splicing_matrix_pmt.h splicing/src/splicing_matrix_pmt.h
> cp src/splicing_memory.h splicing/src/splicing_memory.h
> cp src/splicing_pmt.h splicing/src/splicing_pmt.h
> cp src/splicing_pmt_off.h splicing/src/splicing_pmt_off.h
> cp src/splicing_random.h splicing/src/splicing_random.h
> cp src/splicing_vector.h splicing/src/splicing_vector.h
> cp src/splicing_vector_pmt.h splicing/src/splicing_vector_pmt.h
> cp src/matrix.pmt splicing/src/matrix.pmt
> cp src/vector.pmt splicing/src/vector.pmt
> cd splicing && autoconf && autoheader
> Use of inherited AUTOLOAD for non-method Autom4te::XFile::msg() is 
> deprecated at /usr/share/autoconf/Autom4te/XFile.pm line 238.
> Can't locate auto/Autom4te/XFile/msg.al in @INC (@INC contains: 
> /usr/share/autoconf 
> /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi 
> /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl 
> /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi 
> /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl 
> /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .) 
> at /usr/share/autoconf/Autom4te/XFile.pm line 238
> make: *** [splicing_0.1.tar.gz] Error 1
> 
> -- 
> Julien Roux, PhD
> Gilad lab, Department of Human Genetics, University of Chicago
> http://giladlab.uchicago.edu/
> 920 East 58th Street, CLSC 317, Chicago, IL 60637, USA
> tel: +1-773-834-1984   fax: +1-773-834-8470
> 
> _______________________________________________
> miso-users mailing list
> miso-users at mit.edu
> http://mailman.mit.edu/mailman/listinfo/miso-users