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<div>Hi Emma,</div>
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<div>Thanks. I will replace the DOC version in the CVS repository with a LINUX version.</div>
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<div>Best,</div>
<div>Ou</div>
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<span style="font-weight:bold">From: </span><<a href="mailto:ecco-support-bounces@mit.edu">ecco-support-bounces@mit.edu</a>> on behalf of Emma Boland <<a href="mailto:emmomp@bas.ac.uk">emmomp@bas.ac.uk</a>><br>
<span style="font-weight:bold">Reply-To: </span>"ECCO support list, wider membership" <<a href="mailto:ecco-support@mit.edu">ecco-support@mit.edu</a>><br>
<span style="font-weight:bold">Date: </span>Tuesday, August 1, 2017 at 4:48 AM<br>
<span style="font-weight:bold">To: </span>"<a href="mailto:ecco-support@mit.edu">ecco-support@mit.edu</a>" <<a href="mailto:ecco-support@mit.edu">ecco-support@mit.edu</a>><br>
<span style="font-weight:bold">Subject: </span>Re: [ecco-support] Getting ECCO_v4_r3 running<br>
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<p>Ok, I've fixed it by remaking data.seaice by editing an old version. I think the problem is that the r3 data.seaice contains some erroneous control characters - if you type 'cat -v data.seaice' in a linux command line you can see the extra character '^M'
everywhere - according to wikipedia this is a carriage return in macos, dos etc. I would advise you replace the version in the CVS repository with a corrected one.</p>
<p>Emma<br>
</p>
<div class="moz-cite-prefix">On 01/08/17 11:32, Emma Boland wrote:<br>
</div>
<blockquote type="cite" cite="mid:a2fc32ac-f6b2-dcd6-1cb4-b51898529860@bas.ac.uk">
<p>Hi Ou,</p>
<p>It is definitely a problem with data.seaice, as if I replace it with the r2 data.seaice it starts running. I've tried deleting whitespace, replacing the / with & for the namelist terminator, I've added a blank SEAICE_PARM03 namelist... Nothing seems to work.
I guess there is something funny with the format somewhere in the file but I can't see what.<br>
</p>
<p>I'm pretty sure /tmp/F011.QAAa36052 is just a temporary, local, copy of data.seaice generated at runtime.
<br>
</p>
<p>Here is STDERR.0000:</p>
<p>(PID.TID 0000.0001) ** WARNING ** S.Edge of facet # 1 disconnected (facet_link= 0.00)<br>
(PID.TID 0000.0001) ** WARNING ** S.Edge of facet # 2 disconnected (facet_link= 0.00)<br>
(PID.TID 0000.0001) ** WARNING ** E.Edge of facet # 4 disconnected (facet_link= 0.00)<br>
(PID.TID 0000.0001) ** WARNING ** E.Edge of facet # 5 disconnected (facet_link= 0.00)<br>
(PID.TID 0000.0001) ** WARNING ** INI_PARMS: Ignores diffKrT (or Kp,Kz) setting in file "data" with ALLOW_3D_DIFFKR<br>
(PID.TID 0000.0001) ** WARNING ** INI_PARMS: Ignores diffKrS (or Kp,Kz) setting in file "data" and uses diffKrFile</p>
<p>The end of STDOUT.0000:</p>
<p>(PID.TID 0000.0001) SEAICE_READPARMS: opening data.seaice<br>
(PID.TID 0000.0001) OPEN_COPY_DATA_FILE: opening file data.seaice<br>
(PID.TID 0000.0001) // =======================================================<br>
(PID.TID 0000.0001) // Parameter file "data.seaice"<br>
(PID.TID 0000.0001) // =======================================================<br>
(PID.TID 0000.0001) ># SEAICE parameters<br>
(PID.TID 0000.0001) > &SEAICE_PARM01<br>
(PID.TID 0000.0001) > SEAICEpresH0=2.,<br>
(PID.TID 0000.0001) > SEAICEpresPow0=1,<br>
(PID.TID 0000.0001) > SEAICEpresPow1=1,<br>
(PID.TID 0000.0001) > SEAICE_strength = 2.25e4,<br>
(PID.TID 0000.0001) > SEAICE_area_max = 0.97, <br>
(PID.TID 0000.0001) > SEAICE_no_slip = .TRUE.,<br>
(PID.TID 0000.0001) > SEAICE_drag=0.001,<br>
(PID.TID 0000.0001) > OCEAN_drag=0.001,<br>
(PID.TID 0000.0001) > SEAICEuseTILT=.FALSE.,<br>
(PID.TID 0000.0001) > SEAICE_multDim=1,<br>
(PID.TID 0000.0001) > SEAICErestoreUnderIce=.TRUE.,<br>
(PID.TID 0000.0001) > SEAICE_salt0=4.,<br>
(PID.TID 0000.0001) > LSR_ERROR = 2.e-4,<br>
(PID.TID 0000.0001) > SEAICEuseDYNAMICS = .TRUE.,<br>
(PID.TID 0000.0001) > MIN_ATEMP = -40.,<br>
(PID.TID 0000.0001) > MIN_TICE = -40.,<br>
(PID.TID 0000.0001) > SEAICEadvScheme = 30,<br>
(PID.TID 0000.0001) > SEAICEuseFluxForm = .TRUE.,<br>
(PID.TID 0000.0001) > SEAICEadvSnow = .TRUE.,<br>
(PID.TID 0000.0001) > SEAICEdiffKhHeff = 400.,<br>
(PID.TID 0000.0001) > SEAICEdiffKhArea = 400.,<br>
(PID.TID 0000.0001) > SEAICEdiffKhSnow = 400.,<br>
(PID.TID 0000.0001) > SEAICEuseFlooding = .TRUE.,<br>
(PID.TID 0000.0001) > SEAICE_mcPheePiston= 3.858024691358025E-05,<br>
(PID.TID 0000.0001) > SEAICE_frazilFrac = 1.,<br>
(PID.TID 0000.0001) > SEAICE_mcPheeTaper = 0.,<br>
(PID.TID 0000.0001) > SEAICE_areaLossFormula=2,<br>
(PID.TID 0000.0001) > SEAICEheatConsFix = .TRUE.,<br>
(PID.TID 0000.0001) > SEAICE_tempFrz0 = -1.96,<br>
(PID.TID 0000.0001) > SEAICE_dTempFrz_dS = 0.,<br>
(PID.TID 0000.0001) > SEAICEuseMetricTerms = .TRUE.,<br>
(PID.TID 0000.0001) > SEAICE_clipVelocities = .TRUE.,<br>
(PID.TID 0000.0001) >#take 33% out of (1-albedo)<br>
(PID.TID 0000.0001) > SEAICE_dryIceAlb = 0.84,<br>
(PID.TID 0000.0001) > SEAICE_wetIceAlb = 0.78,<br>
(PID.TID 0000.0001) > SEAICE_drySnowAlb = 0.90,<br>
(PID.TID 0000.0001) > SEAICE_wetSnowAlb = 0.8 ,<br>
(PID.TID 0000.0001) >#default albedos<br>
(PID.TID 0000.0001) > SEAICE_dryIceAlb_south = 0.75,<br>
(PID.TID 0000.0001) > SEAICE_wetIceAlb_south = 0.66,<br>
(PID.TID 0000.0001) > SEAICE_drySnowAlb_south = 0.84,<br>
(PID.TID 0000.0001) > SEAICE_wetSnowAlb_south = 0.7,<br>
(PID.TID 0000.0001) > /<br>
(PID.TID 0000.0001) >#<br>
(PID.TID 0000.0001) > &SEAICE_PARM02<br>
(PID.TID 0000.0001) > /<br>
(PID.TID 0000.0001) >#<br>
(PID.TID 0000.0001) > &SEAICE_PARM03<br>
(PID.TID 0000.0001) > /<br>
(PID.TID 0000.0001) <br>
</p>
<p>And my error log file just says the error I originally posted again and again.</p>
<p>Thanks,<br>
</p>
<p>Emma<br>
</p>
<blockquote>
<p><br>
</p>
Hi Emma,<br>
<br>
It is not obvious from your description what caused the crash. Can you post your STDERR.0000 and the end part of STDOUT.0000, as well as your log file. Also, what is the temporary file /tmp/F011.QAAa36052? Is it just a copy of data.seaice?<br>
<br>
Ou Wang<br>
<br>
From: <ecco-support-bounces at mit.edu<a class="moz-txt-link-rfc2396E" href="mailto:ecco-support-bouncesatmit.edu" moz-do-not-send="true"><mailto:ecco-support-bounces at mit.edu></a>> on behalf of Emma Boland <emmomp at bas.ac.uk<a class="moz-txt-link-rfc2396E" href="mailto:emmompatbas.ac.uk" moz-do-not-send="true"><mailto:emmomp
at bas.ac.uk></a>><br>
Reply-To: "ECCO support list, wider membership" <ecco-support at mit.edu<a class="moz-txt-link-rfc2396E" href="mailto:ecco-supportatmit.edu" moz-do-not-send="true"><mailto:ecco-support at mit.edu></a>><br>
Date: Wednesday, July 26, 2017 at 5:36 AM<br>
To: "ecco-support at mit.edu<a class="moz-txt-link-rfc2396E" href="mailto:ecco-supportatmit.edu" moz-do-not-send="true"><mailto:ecco-support at mit.edu></a>" <ecco-support at mit.edu<a class="moz-txt-link-rfc2396E" href="mailto:ecco-supportatmit.edu" moz-do-not-send="true"><mailto:ecco-support
at mit.edu></a>><br>
Subject: [ecco-support] Getting ECCO_v4_r3 running<br>
<br>
<br>
Hi Guys,<br>
<br>
I'm attempting to get r3 running on the ARCHER machine in the UK. All I've altered are SIZE.h and data.exch2. It's crashing during reading of the namelists - STDOUT implies this is reading data.seaice. I'm getting errors of the sort:<br>
<br>
lib-4001 : UNRECOVERABLE library error<br>
A READ operation tried to read past the end-of-file.<br>
<br>
Encountered during a namelist READ from unit 11<br>
Fortran unit 11 is connected to a sequential formatted text file:<br>
"/tmp/F011.QAAa36052"<br>
<br>
Looking at data.seaice I can't see anything obviously wrong. Is this something anyone else has come across? And just because STDOUT ends after reading data.seaice, is this a guarantee that this is the true cause of the crash (i.e. is the buffer necessarily
up to date when it crashes)?<br>
<br>
Thanks,<br>
<br>
Emma<br>
<br>
--<br>
<br>
Dr Emma Boland<br>
<br>
Physical Oceanographer<br>
Polar Oceans Group<br>
British Antarctic Survey<br>
<br>
Phone: 01223 221276<br>
Web: <a class="moz-txt-link-abbreviated" href="http://www.antarctica.ac.uk/about_bas/contact/staff/profile/eboland" moz-do-not-send="true">
www.antarctica.ac.uk/about_bas/contact/staff/profile/eboland</a><a class="moz-txt-link-rfc2396E" href="https://www.bas.ac.uk/profile/emmomp/" moz-do-not-send="true"><https://www.bas.ac.uk/profile/emmomp/></a><br>
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<p><b>Dr Emma Boland</b></p>
<p>Physical Oceanographer<br>
Polar Oceans Group<br>
British Antarctic Survey<br>
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Web: <a href="https://www.bas.ac.uk/profile/emmomp/" moz-do-not-send="true">www.antarctica.ac.uk/about_bas/contact/staff/profile/eboland</a></font></p>
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<p>Physical Oceanographer<br>
Polar Oceans Group<br>
British Antarctic Survey<br>
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<p><font color="gray">Phone: 01223 221276<br>
Web: <a href="https://www.bas.ac.uk/profile/emmomp/">www.antarctica.ac.uk/about_bas/contact/staff/profile/eboland</a></font></p>
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